PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Gorai.009G327300.1

Common Name

B456_009G327300

Organism

Gossypium raimondii

Taxonomic ID

29730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium

Family

bHLH

Protein Properties

Length: 329aa MW: 36547.4 Da PI: 5.9441

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Gorai.009G327300.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	48.5	1.6e-15	54	103	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+++P+ ++K + a+ L +++eY+++Lq Gorai.009G327300.1 54 RSKHSVTEQRRRSKINERFQVLRDIIPNT----DQKRDTASFLLEVIEYVQYLQ 103 899***********************8....8*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.2E-18	50	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-23	50	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.999	52	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.82E-14	54	107	No hit	No description
Pfam	PF00010	6.8E-13	54	103	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-11	58	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006351	Biological Process	transcription, DNA-templated
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MRTGKQSQEE EEYEEEEFGS KKQGPSSNQI MSGNAINNSN KAGGKNSDKA NAIRSKHSVT 60 EQRRRSKINE RFQVLRDIIP NTDQKRDTAS FLLEVIEYVQ YLQEKVKKYE GSYQEWNSEP 120 AKLMPWRNSH WRVQSFVGQQ QAIKNGSDPG SAFAGKFNEN NININPTMIA SAQNPVESDP 180 VRDTMSKAMD QQPELGSRGM PLPIQGDNML VHPLQRPVSE AQPTECFIGN DTVNQQEDLT 240 IEGGTINISS VYSEELLNSL TQALQSAGLD LSQANISVQI DLGKHANRGL TSGTSAKDPQ 300 SAPFQAMTHH RDVSNGEESD HAQKRMKK*

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00219	DAP	Transfer from AT1G69010	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012448295.1	0.0	PREDICTED: transcription factor BIM2-like isoform X1
Swissprot	Q9CAA4	1e-118	BIM2_ARATH; Transcription factor BIM2
TrEMBL	A0A0D2TYR8	0.0	A0A0D2TYR8_G
STRING	POPTR_0008s11120.1	1e-141	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5987	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	1e-113	BES1-interacting Myc-like protein 2

Link Out ? help Back to Top
Phytozome	Gorai.009G327300.1

Publications ? help Back to Top
Paterson AH, et al. Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres. Nature, 2012. 492(7429): p. 423-7 [PMID:23257886]