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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Gorai.009G327300.1 | ||||||||
Common Name | B456_009G327300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
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Family | bHLH | ||||||||
Protein Properties | Length: 329aa MW: 36547.4 Da PI: 5.9441 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 48.5 | 1.6e-15 | 54 | 103 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr+++P+ ++K + a+ L +++eY+++Lq Gorai.009G327300.1 54 RSKHSVTEQRRRSKINERFQVLRDIIPNT----DQKRDTASFLLEVIEYVQYLQ 103 899*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.2E-18 | 50 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.4E-23 | 50 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.999 | 52 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.82E-14 | 54 | 107 | No hit | No description |
Pfam | PF00010 | 6.8E-13 | 54 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.3E-11 | 58 | 108 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
MRTGKQSQEE EEYEEEEFGS KKQGPSSNQI MSGNAINNSN KAGGKNSDKA NAIRSKHSVT 60 EQRRRSKINE RFQVLRDIIP NTDQKRDTAS FLLEVIEYVQ YLQEKVKKYE GSYQEWNSEP 120 AKLMPWRNSH WRVQSFVGQQ QAIKNGSDPG SAFAGKFNEN NININPTMIA SAQNPVESDP 180 VRDTMSKAMD QQPELGSRGM PLPIQGDNML VHPLQRPVSE AQPTECFIGN DTVNQQEDLT 240 IEGGTINISS VYSEELLNSL TQALQSAGLD LSQANISVQI DLGKHANRGL TSGTSAKDPQ 300 SAPFQAMTHH RDVSNGEESD HAQKRMKK* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00219 | DAP | Transfer from AT1G69010 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012448295.1 | 0.0 | PREDICTED: transcription factor BIM2-like isoform X1 | ||||
Swissprot | Q9CAA4 | 1e-118 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A0D2TYR8 | 0.0 | A0A0D2TYR8_G | ||||
STRING | POPTR_0008s11120.1 | 1e-141 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5987 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 1e-113 | BES1-interacting Myc-like protein 2 |
Link Out ? help Back to Top | |
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Phytozome | Gorai.009G327300.1 |
Publications ? help Back to Top | |||
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